Amino Acids Reference Tool

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Amino acids are organic compounds that contain mostly carbon, hydrogen, oxygen, and nitrogen atoms. They also have amine (–NH2) and carboxyl (–COOH) functional groups with side chains (R groups) that differentiate one amino acid from another. Sulfur and other additional elements can be found in some side chains.

Amino acids are the building blocks of proteins. They can be joined by peptide bonds to form polypeptide chains. Depending on the interactions of neighboring amino acids and their side chains, polypeptides fold and form three-dimensional molecules known as proteins. A protein’s shape and its amino acid components will help determine its function.

In addition to their essential role in protein formation, amino acids are important to biosynthesis, neurotransmitter transport, and other biochemical processes.


Amino Acids Categories

Approximately 500 amino acids exist, but only 20 appear in our genetic code. These 20 proteinogenic amino acids are known as standard amino acids.

An amino acid’s polarity is dependent on the structure of its side chains. The molecule will be more polar if the difference in electronegativity between atoms is greater. For example, alkane branches and benzene rings are considered non-polar, but alcohols and amines are polar.

Amino acids are classified by:

  • Charge (positive vs. negative)
  • pH (acidic vs. basic)
  • Solubility (polar vs. non-polar)
  • Core functional group location: alpha (α), beta (β), gamma (γ), or delta (δ)
  • Side chain structure (aliphatic, aromatic, etc.)

Hydrophobicity

Very HydrophobicHydrophobicNeutralHydrophilic
PhenylalanineTyrosineThreonineArginine
IsoleucineCysteineHistidineLysine
TryptophanAlanineGlycineAsparagine
LeucineSerineGlutamic Acid
ValineGlutamineProline
MethionineAspartic Acid

Based on values at pH 7.

Amino Acid Reference Table

Amino Acid

Abbreviations

pKa, NH2

pKa, COOH

Expand

AlanineAla           A9.872.35
Alanine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)89.09
ClassificationAlkyl

Description: Alanine is a small, non-essential amino acid with a relatively non-reactive single methyl group side chain. It’s one of the simplest amino acids and the second most abundant in proteins. It’s encoded by codons that start with GC.

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ArginineArg          R9.092.18
Arginine
Side Chain PolarityPolar
ChargePositive
Molecular Weight (g/mol)174.20
ClassificationBasic

Description: Arginine is a chemically complex amino acid with a 3-carbon aliphatic side chain ending in a guanidino group. It commonly mediates interactions between proteins and negatively charged DNA and RNA backbones.

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AsparagineAsn         N8.802.02
Asparagine
Side Chain PolarityPolar
ChargeNeutral
Molecular Weight (g/mol)132.12
ClassificationNeutral

Description: Asparagine is an amino acid with a carboxamide side chain. The amide group retains its polarity and is a rich hydrogen bond source, making asparagine a common protein binding site and substrate for glycosyltransferases.

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Aspartic AcidAsp          D9.601.88
Aspartic Acid
Side Chain PolarityPolar
ChargeNegative
Molecular Weight (g/mol)133.10
ClassificationAcidic

Description: Aspartic acid has a carboxylic acid side chain that reacts with other amino acids, enzymes, and proteins. Its negative charge and large hydrogen-bonding potential enables its participation in many molecular interactions.

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CysteineCys          C10.781.71
Cysteine
Side Chain PolarityPolar
ChargeNeutral
Molecular Weight (g/mol)121.16
ClassificationNeutral

Description: Cysteine is a semi-essential proteinogenic amino acid with a thiol side chain that participates in enzymatic reactions. Its sulfhydryl group forms disulfide bonds with other cysteines or molecules with free sulfhydryls.

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Glutamic AcidGlu          E9.672.19
Glutamic Acid
Side Chain PolarityPolar
ChargeNegative
Molecular Weight (g/mol)147.13
ClassificationAcidic

Description: Glutamic acid has one amino and two carboxyl groups that give it a negative charge in virtually all biological systems. This enables glutamic acid to interact with positively charged entities, including metal ions.

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GlutamineGln          Q9.132.17
Glutamine
Side Chain PolarityPolar
ChargeNeutral
Molecular Weight (g/mol)146.15
ClassificationNeutral

Description: Glutamine has a side chain similar to that of glutamic acid; one carboxyl group is simply replaced by an amide. It’s important for nitrogen metabolism and needed to help regulate toxic levels of ammonia in the body.

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GlycineGly          G9.602.34
Glycine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)75.07
ClassificationAlkyl

Description: Glycine is the simplest amino acid with a single hydrogen atom for a side chain. This makes it ideal for accommodating the tight turns of some polypeptide chains. Glycine also acts as an inhibitory neurotransmitter.

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HistidineHis          H8.971.78
Histidine
Side Chain PolarityPolar
ChargePositive
Molecular Weight (g/mol)155.16
ClassificationBasic

Description: Histidine is rare and has a partially protonated aromatic imidazole side chain. It may be neutral or positively charged and can serve as a natural catalyst or prevalent residue at enzyme active sites thanks to its bond potential.

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IsoleucineIle            I9.762.32
Isoleucine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)131.18
ClassificationAlkyl

Description: Isoleucine has a branched hydrocarbon side chain arranged in an "L" shape and is considered one of the largest aliphatic amino acids. It’s concentrated in muscle tissue and encoded by the codons AUU, AUC, and AUA.

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LeucineLeu         L9.602.36
Leucine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)131.18
ClassificationAlkyl

Description: Leucine has an isobutyl group side chain with four fully protonated carbons arranged in a bulky "Y" shape. It’s also the most common amino acid in proteins and one of the largest aliphatic amino acids.

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LysineLys          K10.288.90
Lysine
Side Chain PolarityPolar
ChargePositive
Molecular Weight (g/mol)146.19
ClassificationBasic

Description: Lysine is an essential amino acid with a lysyl side chain. It’s important for proteinogenesis, crosslinking collagen polypeptides, absorbing mineral nutrients, and producing carnitine, key for fatty acid metabolism.

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MethionineMet         M9.212.28
Methionine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)149.21
ClassificationAlkyl

Description: Methionine has a linear side chain and contains a sulfide group. This enables methionine to be a prolific methyl group donor. It also plays a critical role in metabolism, the growth of new blood vessels, and tissue repair.

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PhenylalaninePhe         F9.242.58
Phenylalanine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)165.19
ClassificationAromatic

Description: Phenylalanine contains a benzyl group side chain and is considered the simplest and most abundant aromatic amino acid in proteins. It’s a precursor for tyrosine synthesis, dopamine, norepinephrine, epinephrine, and melanin.

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ProlinePro          P10.601.99
Proline
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)115.13
ClassificationAlkyl

Description: Proline is a proteinogenic amino acid with a cyclic pyrrolidine side chain. It’s non-essential in humans and can be synthesized from glutamic acid. Essential to the immune system, proline is also key to joint and tendon function.

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SerineSer          S9.152.21
Serine
Side Chain PolarityPolar
ChargeNeutral
Molecular Weight (g/mol)105.09
ClassificationNeutral

Description: Serine is an amino acid with a hydroxymethyl group side chain. It’s the simplest hydroxyl amino acid and the third most abundant found in proteins. Serine can be synthesized from glycine and several other metabolites.

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ThreonineThr          T9.122.15
Threonine
Side Chain PolarityPolar
ChargeNeutral
Molecular Weight (g/mol)119.12
ClassificationNeutral

Description: Threonine is an essential amino acid that contains a hydroxyl group, making it polar and uncharged. It shares many properties with serine and is a substrate to kinases and glycosyltransferases. It’s encoded by codons that start with AC.

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TryptophanTrp          W9.392.38
Tryptophan
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)204.23
ClassificationAromatic

Description: Tryptophan is both the largest and rarest amino acid found in proteins. Generally found in the hydrophobic core of proteins, tryptophan is often involved in aromatic stacking. Its side chain is dominated by an indole group.

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TyrosineTyr          Y9.112.20
Tyrosine
Side Chain PolarityPolar
ChargeNeutral
Molecular Weight (g/mol)181.19
ClassificationNeutral

Description: Tyrosine is an aromatic amino acid similar to phenylalanine with a hydroxyl group instead of a phenyl group in the para position. It has unique chemical properties and serves as a catalyst and substrate for a variety of kinases.

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ValineVal          V9.722.29
Valine
Side Chain PolarityNon-Polar
ChargeNeutral
Molecular Weight (g/mol)117.15
ClassificationAlkyl

Description: Valine is a moderately sized aliphatic amino acid with a side chain consisting of a propyl group attached to the CA at C2. Like the other aliphatic residues, valine is often found in the hydrophobic cores of proteins.

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Essential Amino Acids

The human body can produce 10 of the 20 required amino acids. The other half, called essential amino acids, come from your diet and must be consumed regularly.

Produced by the Body (Non-Essential)Supplied by Foods (Essential)
AlanineGlutamineArginine**Methionine
AsparagineGlycineHistidinePhenylalanine
Aspartic AcidProlineIsoleucineThreonine
CysteineSerineLeucineTryptophan
Glutamic AcidTyrosine*LysineValine

*Requires phenylalanine to produce
**Needed by children, but not adults

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